ShipSafe vs CodeQL — Security Scanner Comparison
CodeQL is GitHub's semantic code analysis engine, known for deep interprocedural analysis. ShipSafe is a local-only security scanner built for developers using AI coding assistants. Here is how they compare.
Feature Comparison
| Feature | ShipSafe | CodeQL |
|---|---|---|
| Setup | npm install -g @shipsafe/cli | GitHub Actions or CodeQL CLI + database creation |
| Execution environment | Local machine | GitHub Actions (primary) or local CLI |
| Analysis depth | AST + pattern matching + call graph (Pro) | Deep interprocedural semantic analysis |
| Prompt injection detection | 7 rules | Community queries (limited) |
| Malicious MCP scanning | 30 patterns | Not available |
| Secret detection | 174 patterns | Not a focus (GitHub has Secret Scanning) |
| Image metadata stripping | Built-in (MetaStrip) | Not available |
| MCP server for AI assistants | 8 tools | Copilot integration |
| Git pre-commit hooks | Built-in | Not available (CI/CD focus) |
| Speed | Seconds | Minutes to hours (database creation) |
| Language support | JS, TS, Python | 10+ languages |
| Custom queries | Not available | Powerful QL query language |
| GitHub integration | Via Team plan | Native (pull request annotations) |
ShipSafe Strengths
- ✓Instant setup — npm install and scan in seconds
- ✓Runs anywhere without GitHub dependency
- ✓AI security detection (prompt injection, malicious MCP servers)
- ✓Image metadata stripping (MetaStrip) — unique capability
- ✓Git pre-commit hooks block issues before they reach the repo
- ✓MCP server integrates with Claude, Cursor, Windsurf
- ✓Fast — scans in seconds vs minutes/hours for CodeQL
- ✓Accessible for solo developers without enterprise setup
CodeQL Strengths
- ✓Deep interprocedural semantic analysis — catches complex data flow issues
- ✓Powerful custom query language (QL) for writing bespoke analyses
- ✓Native GitHub integration with pull request annotations
- ✓Free for open-source projects on GitHub
- ✓Extensive vulnerability research from GitHub Security Lab
- ✓Strong academic foundation in program analysis
Key Differentiators
Speed
ShipSafe scans in seconds. CodeQL requires building a database (minutes to hours for large codebases) before analysis can begin.
GitHub Independence
ShipSafe runs anywhere. CodeQL is designed around the GitHub ecosystem and is most useful with GitHub Actions.
AI Security
ShipSafe has prompt injection and MCP threat detection. CodeQL has limited community queries for AI security.
Developer Workflow
ShipSafe provides git hooks and MCP server for real-time security during development. CodeQL is a CI/CD tool that runs after code is pushed.
The Verdict
Choose ShipSafe if you want instant, local security scanning with AI-specific rules during development. Choose CodeQL if you need deep semantic analysis, custom query authoring, or are already invested in the GitHub ecosystem for enterprise security.
Try ShipSafe Free
Install and scan your project in under 60 seconds.
npm install -g @shipsafe/cli